喜树碱
水溶液
密度泛函理论
化学
分子
计算化学
分子动力学
含时密度泛函理论
溶剂化
周期边界条件
化学物理
组合化学
物理化学
边值问题
有机化学
物理
量子力学
作者
Nico Sanna,Giovanni Chillemi,Lorenzo Gontrani,A. Grandi,Giordano Mancini,S. Trini Castelli,Giuseppe Zagotto,Costantino Zazza,Vincenzo Barone,Alessandro Desideri
摘要
The ultraviolet−visible absorption spectrum of camptothecin (CPT) has been been recorded in aqueous solution at pH 5.3, where the equilibrium among the different CPT forms is shifted toward the lactonic one. Time-dependent density functional theory (TD-DFT) computations lead to a remarkable reproduction of the experimental spectrum only upon addition of explicit water molecules in interaction with specific moieties of the camptothecin molecule. Molecular dynamics (MD) simulations enforcing boundary periodic conditions for CPT embedded with 865 water molecules, with a force field derived from DFT computations, show that the experimental spectrum is due to the contributions of CPT molecules with different solvation patterns. A similar solvent effect is observed for several CPT derivatives, including the clinically relevant SN-38 and topotecan drugs. The quantitative agreement between TD-DFT/MD computations and experimental data allow us to identify specific spectroscopic signatures diagnostic of the drug environment and to develop procedures that can be used to monitor the drug−DNA/protein interaction.
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