黑森矩阵
势能面
统计物理学
计算机科学
先验与后验
势能
配置空间
朗之万动力
分段
能源景观
耦合簇
鞍点
算法
解耦(概率)
重采样
二次方程
星团(航天器)
特征向量
过渡状态
物理
异构化
可微函数
分子动力学
离解(化学)
生物系统
反应动力学
量子动力学
采样(信号处理)
数学
简并能级
梯度下降
化学
水二聚体
参数空间
作者
Michael Ketter,Georg K. H. Madsen
标识
DOI:10.1021/acs.jctc.6c00679
摘要
Exploring the potential energy surface to sample transition-state regions is essential to understanding the atomic processes governing chemical reactivity. Ideally, the dividing surface between the educt and product states can be sampled without requiring predefined collective variables. Here, we adapt the stochastic saddle point dynamics (SSPD) algorithm by constraining the accessible configuration space according to the number of negative Hessian eigenvalues and evaluate its performance across increasingly complex systems. We motivate the adaptation using a simple two-dimensional model potential and demonstrate how the algorithm can efficiently sample the isomerization reaction of a Lennard-Jones cluster and the decomposition reactions of isopropyl alcohol. Combining the SSPD with automatically differentiable machine-learned interatomic potentials, we apply the approach to CO dissociation on a Co(001) surface both with and without explicit water solvation. The results highlight the role of SSPD as a framework for sampling transition-state regions in complex systems at finite temperatures and demonstrate its versatility in situations where it is not known a priori whether the reaction is governed by energetic or entropic contributions.
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